Index _ | B | C | D | E | F | G | I | L | M | N | P | R | S | T | U | W _ __getitem__() (pyrodigal.MetagenomicBins method) __init__() (pyrodigal.GeneFinder method) (pyrodigal.Masks method) (pyrodigal.MetagenomicBin method) (pyrodigal.MetagenomicBins method) (pyrodigal.Nodes method) (pyrodigal.Sequence method) (pyrodigal.TrainingInfo method) __len__() (pyrodigal.Genes method) (pyrodigal.MetagenomicBins method) (pyrodigal.Nodes method) (pyrodigal.Sequence method) B begin (pyrodigal.Gene attribute) (pyrodigal.Mask attribute) bias (pyrodigal.TrainingInfo attribute) C clear() (pyrodigal.Masks method) (pyrodigal.Nodes method) closed (pyrodigal.GeneFinder attribute) coding_statistics (pyrodigal.TrainingInfo attribute) confidence() (pyrodigal.Gene method) copy() (pyrodigal.Masks method) (pyrodigal.Nodes method) cscore (pyrodigal.Gene attribute) (pyrodigal.Node attribute) D description (pyrodigal.MetagenomicBin attribute) dump() (pyrodigal.TrainingInfo method) E edge (pyrodigal.Node attribute) end (pyrodigal.Gene attribute) (pyrodigal.Mask attribute) extract() (pyrodigal.Nodes method) F find_genes() (pyrodigal.GeneFinder method) G gc (pyrodigal.Sequence attribute) (pyrodigal.TrainingInfo attribute) gc_bias (pyrodigal.Node attribute) gc_cont (pyrodigal.Gene attribute) (pyrodigal.Node attribute) gc_known (pyrodigal.Sequence attribute) Gene (class in pyrodigal) GeneFinder (class in pyrodigal) Genes (class in pyrodigal) I index (pyrodigal.Node attribute) intersects() (pyrodigal.Mask method) L load() (pyrodigal.TrainingInfo class method) M Mask (class in pyrodigal) mask (pyrodigal.GeneFinder attribute) Masks (class in pyrodigal) masks (pyrodigal.Sequence attribute) max_overlap (pyrodigal.GeneFinder attribute) meta (pyrodigal.GeneFinder attribute) (pyrodigal.Genes attribute) metagenomic_bin (pyrodigal.Genes attribute) MetagenomicBin (class in pyrodigal) MetagenomicBins (class in pyrodigal) min_edge_gene (pyrodigal.GeneFinder attribute) min_gene (pyrodigal.GeneFinder attribute) missing_motif_weight (pyrodigal.TrainingInfo attribute) motif_weights (pyrodigal.TrainingInfo attribute) N Node (class in pyrodigal) Nodes (class in pyrodigal) nodes (pyrodigal.Genes attribute) P partial_begin (pyrodigal.Gene attribute) partial_end (pyrodigal.Gene attribute) R rbs_motif (pyrodigal.Gene attribute) rbs_spacer (pyrodigal.Gene attribute) rbs_weights (pyrodigal.TrainingInfo attribute) reset_scores() (pyrodigal.Nodes method) rscore (pyrodigal.Gene attribute) (pyrodigal.Node attribute) S score (pyrodigal.Gene attribute) (pyrodigal.Genes attribute) (pyrodigal.Node attribute) score() (pyrodigal.Nodes method) Sequence (class in pyrodigal) sequence (pyrodigal.Genes attribute) sequence() (pyrodigal.Gene method) sort() (pyrodigal.Nodes method) sscore (pyrodigal.Gene attribute) (pyrodigal.Node attribute) start_node (pyrodigal.Gene attribute) start_type (pyrodigal.Gene attribute) start_weight (pyrodigal.TrainingInfo attribute) stop_node (pyrodigal.Gene attribute) strand (pyrodigal.Gene attribute) (pyrodigal.Node attribute) T to_dict() (pyrodigal.TrainingInfo method) train() (pyrodigal.GeneFinder method) training_info (pyrodigal.GeneFinder attribute) (pyrodigal.Genes attribute) (pyrodigal.MetagenomicBin attribute) TrainingInfo (class in pyrodigal) translate() (pyrodigal.Gene method) translation_table (pyrodigal.Gene attribute) (pyrodigal.TrainingInfo attribute) tscore (pyrodigal.Gene attribute) (pyrodigal.Node attribute) type (pyrodigal.Node attribute) type_weights (pyrodigal.TrainingInfo attribute) U unknown (pyrodigal.Sequence attribute) upstream_compositions (pyrodigal.TrainingInfo attribute) uscore (pyrodigal.Gene attribute) uses_sd (pyrodigal.TrainingInfo attribute) W with_capacity() (pyrodigal.Nodes class method) write_genbank() (pyrodigal.Genes method) write_genes() (pyrodigal.Genes method) write_gff() (pyrodigal.Genes method) write_scores() (pyrodigal.Genes method) write_translations() (pyrodigal.Genes method)
