API Reference
=============

.. toctree::
   :hidden:

   gene_finder <gene_finder>
   training_info <training_info>
   metagenomic_bin <metagenomic_bin>
   genes <genes>
   nodes <nodes>
   sequence <sequence>
   masks <masks>


.. currentmodule:: pyrodigal

.. only:: html

    GeneFinder
    ----------

    .. autosummary::
        :nosignatures:

        pyrodigal.GeneFinder


    TrainingInfo
    ------------

    .. autosummary::
       :nosignatures:

       pyrodigal.TrainingInfo

    MetagenomicBin
    --------------

    .. autosummary::
       :nosignatures:

       pyrodigal.MetagenomicBin
       pyrodigal.MetagenomicBins


    Genes
    -----

    .. autosummary::
       :nosignatures:

       pyrodigal.Genes
       pyrodigal.Gene

    Nodes
    -----

    .. autosummary::
       :nosignatures:

       pyrodigal.Nodes
       pyrodigal.Node

    Sequence
    --------

    .. autosummary::
       :nosignatures:

       pyrodigal.Sequence

    Masks
    -----

    .. autosummary::
       :nosignatures:

       pyrodigal.Masks
       pyrodigal.Mask