API Reference
=============

.. currentmodule:: pyrodigal

This section contains a complete reference of the ``pyrodigal`` module API.

Gene Finder
-----------

.. autosummary::
   :nosignatures:

   pyrodigal.GeneFinder

.. toctree::
    :maxdepth: 1
    :hidden:

    gene_finder


Training Info
-------------

.. autosummary::
   :nosignatures:

   pyrodigal.TrainingInfo

.. toctree::
    :maxdepth: 1
    :hidden:

    training_info


Metagenomic Bin
---------------

.. autosummary::
   :nosignatures:

   pyrodigal.MetagenomicBin
   pyrodigal.MetagenomicBins

.. toctree::
    :maxdepth: 1
    :hidden:

    metagenomic_bin


Genes
-----

.. autosummary::
   :nosignatures:

   pyrodigal.Genes
   pyrodigal.Gene

.. toctree::
    :maxdepth: 1
    :hidden:

    genes


Nodes
-----

.. autosummary::
   :nosignatures:

   pyrodigal.Nodes
   pyrodigal.Node

.. toctree::
    :maxdepth: 1
    :hidden:

    nodes


Sequence
--------

.. autosummary::
   :nosignatures:

   pyrodigal.Sequence


.. toctree::
    :maxdepth: 1
    :hidden:

    sequence


Masks
-----

.. autosummary::
   :nosignatures:

   pyrodigal.Masks
   pyrodigal.Mask

.. toctree::
    :maxdepth: 1
    :hidden:

    masks