pyrodigal
3.3.0
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Added
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Index
_
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
W
_
__init__() (pyrodigal.GeneFinder method)
(pyrodigal.Masks method)
(pyrodigal.MetagenomicBin method)
,
[1]
(pyrodigal.MetagenomicBins method)
(pyrodigal.Nodes method)
(pyrodigal.Sequence method)
(pyrodigal.TrainingInfo method)
__len__() (pyrodigal.Sequence method)
B
begin (pyrodigal.Gene attribute)
(pyrodigal.Mask attribute)
bias (pyrodigal.TrainingInfo attribute)
C
clear() (pyrodigal.Masks method)
(pyrodigal.Nodes method)
closed (pyrodigal.GeneFinder attribute)
coding_statistics (pyrodigal.TrainingInfo attribute)
confidence() (pyrodigal.Gene method)
copy() (pyrodigal.Masks method)
(pyrodigal.Nodes method)
cscore (pyrodigal.Gene attribute)
(pyrodigal.Node attribute)
D
description (pyrodigal.MetagenomicBin attribute)
,
[1]
dump() (pyrodigal.TrainingInfo method)
E
edge (pyrodigal.Node attribute)
end (pyrodigal.Gene attribute)
(pyrodigal.Mask attribute)
extract() (pyrodigal.Nodes method)
F
find_genes() (pyrodigal.GeneFinder method)
G
gc (pyrodigal.Sequence attribute)
(pyrodigal.TrainingInfo attribute)
gc_bias (pyrodigal.Node attribute)
gc_cont (pyrodigal.Gene attribute)
(pyrodigal.Node attribute)
gc_known (pyrodigal.Sequence attribute)
Gene (class in pyrodigal)
GeneFinder (class in pyrodigal)
Genes (class in pyrodigal)
I
index (pyrodigal.Node attribute)
intersects() (pyrodigal.Mask method)
L
load() (pyrodigal.TrainingInfo class method)
M
Mask (class in pyrodigal)
mask (pyrodigal.GeneFinder attribute)
Masks (class in pyrodigal)
masks (pyrodigal.Sequence attribute)
max_overlap (pyrodigal.GeneFinder attribute)
meta (pyrodigal.GeneFinder attribute)
(pyrodigal.Genes attribute)
metagenomic_bin (pyrodigal.Genes attribute)
MetagenomicBin (class in pyrodigal)
,
[1]
MetagenomicBins (class in pyrodigal)
min_edge_gene (pyrodigal.GeneFinder attribute)
min_gene (pyrodigal.GeneFinder attribute)
missing_motif_weight (pyrodigal.TrainingInfo attribute)
motif_weights (pyrodigal.TrainingInfo attribute)
N
Node (class in pyrodigal)
Nodes (class in pyrodigal)
nodes (pyrodigal.Genes attribute)
P
partial_begin (pyrodigal.Gene attribute)
partial_end (pyrodigal.Gene attribute)
R
rbs_motif (pyrodigal.Gene attribute)
rbs_spacer (pyrodigal.Gene attribute)
rbs_weights (pyrodigal.TrainingInfo attribute)
reset_scores() (pyrodigal.Nodes method)
rscore (pyrodigal.Gene attribute)
(pyrodigal.Node attribute)
S
score (pyrodigal.Gene attribute)
(pyrodigal.Node attribute)
score() (pyrodigal.Nodes method)
Sequence (class in pyrodigal)
sequence (pyrodigal.Genes attribute)
sequence() (pyrodigal.Gene method)
sort() (pyrodigal.Nodes method)
sscore (pyrodigal.Gene attribute)
(pyrodigal.Node attribute)
start_node (pyrodigal.Gene attribute)
start_type (pyrodigal.Gene attribute)
start_weight (pyrodigal.TrainingInfo attribute)
stop_node (pyrodigal.Gene attribute)
strand (pyrodigal.Gene attribute)
(pyrodigal.Node attribute)
T
to_dict() (pyrodigal.TrainingInfo method)
train() (pyrodigal.GeneFinder method)
training_info (pyrodigal.GeneFinder attribute)
(pyrodigal.Genes attribute)
(pyrodigal.MetagenomicBin attribute)
,
[1]
TrainingInfo (class in pyrodigal)
translate() (pyrodigal.Gene method)
translation_table (pyrodigal.Gene attribute)
(pyrodigal.TrainingInfo attribute)
tscore (pyrodigal.Gene attribute)
(pyrodigal.Node attribute)
type (pyrodigal.Node attribute)
type_weights (pyrodigal.TrainingInfo attribute)
U
unknown (pyrodigal.Sequence attribute)
upstream_compositions (pyrodigal.TrainingInfo attribute)
uscore (pyrodigal.Gene attribute)
uses_sd (pyrodigal.TrainingInfo attribute)
W
with_capacity() (pyrodigal.Nodes class method)
write_genbank() (pyrodigal.Genes method)
write_genes() (pyrodigal.Genes method)
write_gff() (pyrodigal.Genes method)
write_scores() (pyrodigal.Genes method)
write_translations() (pyrodigal.Genes method)